The former Brazilian leader has been detained after authorities determined he posed a definite escape threat while under house arrest.
The former head of state was found guilty of planning a military coup in September and sentenced more than a 27-year term in prison, but he remained under house arrest pending appeals.
Brazilian Supreme Court Justice Justice Moraes said the move to detain the 70-year-old politician was a preventative measure after fresh information emerged.
This encompassed attempting to break his electronic bracelet and a call for a public vigil that could enable a chance to flee".
In a document approving the arrest, Justice Moraes said data from the centre monitoring Bolsonaro's house arrest suggested the ex-president's plan to remove the electronic ankle bracelet to guarantee victory in his flight.
This, it said, would be made easier by the confusion caused by the protest called by his child.
His offspring, Flávio, who works as a congressional representative, called for a gathering of his backers near the former president's residence to take place on the weekend.
His son wrote on online platforms on Friday: "Are you going to fight for your country, or watch it all from your phone there on your sofa? I call on you to struggle with us."
He said the demonstration would be so followers could offer prayers for his health and for the return of democracy in our country."
Part of Justice Moraes's decision was the possibility of the former president's transfer to foreign missions near the dwelling, considering that the probes revealed a history of organizing to request asylum through a consular facility", a declaration said.
The court filing highlights that the American diplomatic mission in the national capital, Brasilia, is located around approximately 13 kilometers from his dwelling.
Bolsonaro's legal woes have provoked anger from fellow right-wing populist US President President Trump, prompting him to implement a half-rate duty on goods coming from Brazil.
Bolsonaro is being detained in a federal law enforcement building in the capital and will experience a imprisonment assessment on the next day.
It was only on last Friday that the his legal team asked the Supreme Court to permit him to fulfill his full incarceration period under house arrest, with tracking devices.
They also asked that he be allowed to exit his dwelling for medical care, saying he required regular treatment for respiratory ailments and other ailments.
Bolsonaro was found guilty of leading a conspiracy aimed at keeping him in power after he failed to win the presidential race to his ideological adversary, Luiz Inácio Lula da Silva.
Supreme Court justices said that he had knowledge of a plot which included plans to murder the current president and his VP candidate, Geraldo Alckmin, and to imprison and murder the presiding judge - the top judicial official who has been overseeing Bolsonaro's trial.
The plot was prevented because it failed to get the support of the army and air force commanders. The current president was sworn in without incident on the first day of 2023.
But a week later, on the eighth of January, thousands of Bolsonaro supporters attacked and damaged official structures in the national capital, BrasĂlia.
The police intervened and around fifteen hundred individuals were detained.
The magistrates found that the demonstrators had been encouraged by him whose strategy, they said, was for the country's army to step in, bring back stability and bring him back to power.
At the time, Bolsonaro's lawyers called the decades-long sentence "absurdly excessive.
He was also banned from campaigning for office until 2060 - eight years later after the end of his sentence.
The former president called the court case a political persecution and said it was designed to prevent him running in the 2026 presidential election.